Cheng Zhang*, Vu Dinh* and Frederick A. Matsen IV (2020).
Non-bifurcating phylogenetic inference via the adaptive lasso.
To appear on The Journal of the American Statistical Association.[arxiv]
Lam Si Tung Ho*, Vu Dinh*, Frederick A. Matsen IV and Marc A Suchard.
On the convergence of the maximum likelihood estimator for the transition rate under a 2-state symmetric model. Journal of Mathematical Biology 80.4 (2020), 1119-1138.[arxiv]
David A. Shaw, Vu Dinh and Frederick A. Matsen IV.
Joint maximum likelihood of phylogeny and ancestral states is not consistent. Molecular Biology and Evolution 36.10 (2019): 2352-2357.[doi][pdf]
Lam Si Tung Ho, Vu Dinh and Cuong Viet Nguyen.
Multi-task learning improves ancestral state reconstruction. Theoretical Population Biology 126 (2019): 33-39.[pdf]
Vu Dinh*, Lam Si Tung Ho*, Marc A. Suchard and Frederick A. Matsen IV.
Consistency and convergence of phylogenetic inference with species tree regularization. The Annals of Statistics 46.4 (2018): 1481-1512.[arxiv]
Vu Dinh, Aaron E. Darling and Frederick A. Matsen IV.
Online Bayesian phylogenetic inference: theoretical foundations via Sequential Monte Carlo. Systematic Biology 67.3 (2018) 503–517[arxiv]
Mathieu Fourment, Brian C. Claywell, Vu Dinh, Connor McCoy, Frederick A. Matsen IV and Aaron E. Darling.
Effective online Bayesian phylogenetics via Sequential Monte Carlo with guided proposals. Systematic Biology 67.3 (2018) 490–502.[bioRxiv]
Brian C. Claywell, Vu Dinh, Mathieu Fourment, Connor O. McCoy and Frederick A. Matsen IV.
A surrogate function for one-dimensional phylogenetic likelihoods. Molecular Biology and Evolution 35.1 (2018), 242-246.[arxiv]
Vu Dinh*, Arman Bilge*, Cheng Zhang* and Frederick A. Matsen IV.
Probabilistic path Hamiltonian Monte Carlo. International Conference on Machine Learning (ICML 2017).
[arxiv]
Vu Dinh and Frederick A. Matsen IV.
The shape of the one-dimensional phylogenetic likelihood function. The Annals of Applied Probability 27.3 (2017): 1646-1677.
[arxiv]